8.10 EMP_volcanol_plot
The module EMP_volcanol_plot is designed for the difference analysis result.
8.10.1 Basic vocanol plot
Note：
The parameter
The parameter
show provides html document.🏷️Example:
MAE |>
EMP_decostand(experiment = 'geno_ec',method = 'integer') |>
EMP_diff_analysis(method='DESeq2',.formula = ~Group) |>
EMP_volcanol_plot(show='html')
8.10.2 Vocanol plot with markers
Note：
The module inherits the
The module inherits the
geom_text_repel from the ggrepel package.
🏷️Example 1:
MAE |>
EMP_decostand(experiment = 'geno_ec',method = 'integer') |>
EMP_diff_analysis(method='DESeq2',.formula = ~Group) |>
EMP_volcanol_plot(key_feature = c('3.6.1.62','1.5.3.19'),show='pic',
min.segment.length = 0, seed = 42, box.padding = 0.5)
🏷️Example 2:
MAE |>
EMP_decostand(experiment = 'geno_ec',method = 'integer') |>
EMP_diff_analysis(method='DESeq2',.formula = ~Group) |>
EMP_volcanol_plot(key_feature = c('3.6.1.62','1.5.3.19'),color = "white",
bg.color = "grey30",bg.r = 0.15)
